STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c3410Hypothetical protein. (50 aa)    
Predicted Functional Partners:
c3406
Phosphosugar isomerase; Residues 1 to 195 of 198 are 44.10 pct identical to residues 1 to 195 of 322 from SwissProt.40 : >sp|O67500|YF46_AQUAE Hypothetical protein AQ_1546.
     
 0.771
c3409
Antiterminator; Residues 1 to 293 of 293 are 98.63 pct identical to residues 1 to 293 of 293 from GenPept.129 : >gb|AAC61733.1| (AF081286) sacpa operon antiterminator R1 [Escherichia coli].
       0.563
c3407
Beta-cystathionase; Residues 1 to 336 of 391 are 99.70 pct identical to residues 1 to 336 of 336 from GenPept.129 : >gb|AAC61731.1| (AF081286) beta-cystathionase [Escherichia coli].
       0.497
c3408
Maltose and glucose-permease IIABC component; Escherichia coli K-12 ortholog: b1621; Escherichia coli O157:H7 ortholog: z2626.
       0.497
c4985
Putative sorbose PTS component; Escherichia coli O157:H7 ortholog: z5617.
      
 0.493
c4981
Putative oxidoreductase; Escherichia coli K-12 ortholog: b2931; Escherichia coli O157:H7 ortholog: z5613.
      
 0.489
c4987
Putative transcriptional regulator of sorbose uptake and utilization genes; Escherichia coli O157:H7 ortholog: z5619.
      
 0.489
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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