STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c3459Possible hypoxanthine oxidase xdhD; Escherichia coli K-12 ortholog: b2881; Escherichia coli O157:H7 ortholog: z4220. (956 aa)    
Predicted Functional Partners:
ygfM
Hypothetical protein ygfM; Escherichia coli K-12 ortholog: b2880; Escherichia coli O157:H7 ortholog: z4219.
 
 0.999
ygfK
Hypothetical protein ygfK; Escherichia coli K-12 ortholog: b2878; Escherichia coli O157:H7 ortholog: z4217.
 
 0.998
ygeT
Xanthine dehydrogenase, FAD binding subunit; Escherichia coli K-12 ortholog: b2867; Escherichia coli O157:H7 ortholog: z4206.
 
 0.984
yqeB
Hypothetical protein yqeB; Escherichia coli K-12 ortholog: b2875; Escherichia coli O157:H7 ortholog: z4214.
 
  
 0.968
c3457
SsnA protein; Escherichia coli K-12 ortholog: b2879; Escherichia coli O157:H7 ortholog: z4218.
 
  
 0.943
ydbK
Probable pyruvate-flavodoxin oxidoreductase; Escherichia coli K-12 ortholog: b1378; Escherichia coli O157:H7 ortholog: z2332.
  
  
 0.929
ynfF
Probable dimethyl sulfoxide reductase chain ynfF precursor; Escherichia coli K-12 ortholog: b1588; Escherichia coli O157:H7 ortholog: z2576; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.913
ynfE
Putative dimethyl sulfoxide reductase chain ynfE precursor; Escherichia coli K-12 ortholog: b1587; Escherichia coli O157:H7 ortholog: z2575; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.912
trxB
Thioredoxin reductase; Escherichia coli K-12 ortholog: b0888; Escherichia coli O157:H7 ortholog: z1232.
    
  0.902
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
  0.900
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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