STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
papXPapX protein; Residues 18 to 183 of 183 are 96.38 pct identical to residues 1 to 166 of 166 from SwissProt.40 : >sp|P42192|PRSX_ECOLI PRSX PROTEIN. (183 aa)    
Predicted Functional Partners:
marR
Multiple antibiotic resistance protein marR; Escherichia coli K-12 ortholog: b1530; Escherichia coli O157:H7 ortholog: z2171.
  
   
 0.634
c3581
Hypothetical protein.
       0.527
yagU
Hypothetical protein yagU; Escherichia coli K-12 ortholog: b0287; Escherichia coli O157:H7 ortholog: z0353.
      
 0.493
yifA
Conserved hypothetical protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
   
  
 0.471
papG
PapG protein; Residues 1 to 336 of 336 are 57.01 pct identical to residues 1 to 335 of 335 from SwissProt.40 : >sp|P42188|PRSG_ECOLI FIMBRIAL PROTEIN PRSG PRECURSOR (ADHESIN).
       0.418
arcB
Aerobic respiration control sensor protein arcB; Escherichia coli K-12 ortholog: b3210; Escherichia coli O157:H7 ortholog: z4574.
 
  
 0.412
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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