STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjjAHypothetical protein yjjA precursor; Protein P-18; Escherichia coli K-12 ortholog: b4360; Escherichia coli O157:H7 ortholog: z5960. (165 aa)    
Predicted Functional Partners:
dnaC
DNA replication protein dnaC; This protein is required for chromosomal replication. It forms, in concert with DnaB protein and other prepriming proteins DnaT, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' (By similarity).
 
  
 0.892
yjjB
Protein P-14; Escherichia coli K-12 ortholog: b4363; Escherichia coli O157:H7 ortholog: z5963.
     
 0.810
ompX
Outer membrane protein X precursor; Escherichia coli K-12 ortholog: b0814; Escherichia coli O157:H7 ortholog: z1036.
  
     0.732
yqjB
Hypothetical protein yqjB; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.730
yhcR
Hypothetical protein yhcR; Escherichia coli K-12 ortholog: b3242; Escherichia coli O157:H7 ortholog: z4601; Belongs to the AaeX family.
  
     0.695
yrbB
Hypothetical protein yrbB; Escherichia coli K-12 ortholog: b3191; Escherichia coli O157:H7 ortholog: z4554.
  
     0.685
yccT
Hypothetical protein yccT precursor; Escherichia coli K-12 ortholog: b0964; Escherichia coli O157:H7 ortholog: z1315; Belongs to the UPF0319 family.
  
     0.681
yebY
Hypothetical protein yebY precursor; Escherichia coli K-12 ortholog: b1839; Escherichia coli O157:H7 ortholog: z2887.
  
     0.679
psiF
Phosphate starvation-inducible protein psiF precursor; Escherichia coli K-12 ortholog: b0384; Escherichia coli O157:H7 ortholog: z0480.
  
     0.678
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.672
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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