Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARK28483.1 | ARK28488.1 | BkAM31D_00560 | BkAM31D_00585 | UvrB/uvrC motif protein. | Putative PIN and TRAM-domain containing protein precursor. | 0.693 |
ARK28483.1 | clpB | BkAM31D_00560 | BkAM31D_16435 | UvrB/uvrC motif protein. | Chaperone protein ClpB. | 0.615 |
ARK28483.1 | clpC | BkAM31D_00560 | BkAM31D_00570 | UvrB/uvrC motif protein. | Negative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family. | 0.959 |
ARK28483.1 | clpE | BkAM31D_00560 | BkAM31D_12335 | UvrB/uvrC motif protein. | ATP-dependent Clp protease ATP-binding subunit ClpE; Belongs to the ClpA/ClpB family. | 0.615 |
ARK28483.1 | ctsR | BkAM31D_00560 | BkAM31D_00555 | UvrB/uvrC motif protein. | Transcriptional regulator CtsR; Belongs to the CtsR family. | 0.980 |
ARK28483.1 | disA_1 | BkAM31D_00560 | BkAM31D_00580 | UvrB/uvrC motif protein. | DNA integrity scanning protein DisA; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. | 0.671 |
ARK28483.1 | mcsB | BkAM31D_00560 | BkAM31D_00565 | UvrB/uvrC motif protein. | Putative ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in a large number of proteins. Is part of the bacterial stress response system. Protein arginine phosphorylation has a physiologically important role and is involved in the regulation of many critical cellular processes, such as protein homeostasis, motility, competence, and stringent and stress responses, by regulating gene expression and protein activity. | 0.997 |
ARK28483.1 | radA | BkAM31D_00560 | BkAM31D_00575 | UvrB/uvrC motif protein. | Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.695 |
ARK28483.1 | yocK | BkAM31D_00560 | BkAM31D_15150 | UvrB/uvrC motif protein. | General stress protein 16O. | 0.655 |
ARK28483.1 | ywlE | BkAM31D_00560 | BkAM31D_24455 | UvrB/uvrC motif protein. | Low molecular weight protein-tyrosine-phosphatase YwlE. | 0.619 |
ARK28488.1 | ARK28483.1 | BkAM31D_00585 | BkAM31D_00560 | Putative PIN and TRAM-domain containing protein precursor. | UvrB/uvrC motif protein. | 0.693 |
ARK28488.1 | clpC | BkAM31D_00585 | BkAM31D_00570 | Putative PIN and TRAM-domain containing protein precursor. | Negative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family. | 0.536 |
ARK28488.1 | ctsR | BkAM31D_00585 | BkAM31D_00555 | Putative PIN and TRAM-domain containing protein precursor. | Transcriptional regulator CtsR; Belongs to the CtsR family. | 0.751 |
ARK28488.1 | disA_1 | BkAM31D_00585 | BkAM31D_00580 | Putative PIN and TRAM-domain containing protein precursor. | DNA integrity scanning protein DisA; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. | 0.724 |
ARK28488.1 | mcsB | BkAM31D_00585 | BkAM31D_00565 | Putative PIN and TRAM-domain containing protein precursor. | Putative ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in a large number of proteins. Is part of the bacterial stress response system. Protein arginine phosphorylation has a physiologically important role and is involved in the regulation of many critical cellular processes, such as protein homeostasis, motility, competence, and stringent and stress responses, by regulating gene expression and protein activity. | 0.678 |
ARK28488.1 | radA | BkAM31D_00585 | BkAM31D_00575 | Putative PIN and TRAM-domain containing protein precursor. | Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.775 |
clpB | ARK28483.1 | BkAM31D_16435 | BkAM31D_00560 | Chaperone protein ClpB. | UvrB/uvrC motif protein. | 0.615 |
clpB | ctsR | BkAM31D_16435 | BkAM31D_00555 | Chaperone protein ClpB. | Transcriptional regulator CtsR; Belongs to the CtsR family. | 0.630 |
clpB | mcsB | BkAM31D_16435 | BkAM31D_00565 | Chaperone protein ClpB. | Putative ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in a large number of proteins. Is part of the bacterial stress response system. Protein arginine phosphorylation has a physiologically important role and is involved in the regulation of many critical cellular processes, such as protein homeostasis, motility, competence, and stringent and stress responses, by regulating gene expression and protein activity. | 0.696 |
clpB | radA | BkAM31D_16435 | BkAM31D_00575 | Chaperone protein ClpB. | Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.401 |
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