Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ARK29445.1 | ARK29447.1 | BkAM31D_06020 | BkAM31D_06030 | Thermitase; Belongs to the peptidase S8 family. | Divergent polysaccharide deacetylase. | 0.806 |
| ARK29445.1 | tnrA | BkAM31D_06020 | BkAM31D_06035 | Thermitase; Belongs to the peptidase S8 family. | HTH-type transcriptional regulator TnrA. | 0.575 |
| ARK29445.1 | yncA | BkAM31D_06020 | BkAM31D_06025 | Thermitase; Belongs to the peptidase S8 family. | N-acyltransferase YncA. | 0.802 |
| ARK29447.1 | ARK29445.1 | BkAM31D_06030 | BkAM31D_06020 | Divergent polysaccharide deacetylase. | Thermitase; Belongs to the peptidase S8 family. | 0.806 |
| ARK29447.1 | tnrA | BkAM31D_06030 | BkAM31D_06035 | Divergent polysaccharide deacetylase. | HTH-type transcriptional regulator TnrA. | 0.575 |
| ARK29447.1 | yncA | BkAM31D_06030 | BkAM31D_06025 | Divergent polysaccharide deacetylase. | N-acyltransferase YncA. | 0.803 |
| dnaJ | rpoB | BkAM31D_05275 | BkAM31D_00680 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.462 |
| dnaJ | sigA | BkAM31D_05275 | BkAM31D_05445 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.685 |
| dnaJ | tnrA | BkAM31D_05275 | BkAM31D_06035 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | HTH-type transcriptional regulator TnrA. | 0.683 |
| glnA_1 | glnA_2 | BkAM31D_14265 | BkAM31D_24835 | Glutamine synthetase. | Glutamine synthetase. | 0.904 |
| glnA_1 | tnrA | BkAM31D_14265 | BkAM31D_06035 | Glutamine synthetase. | HTH-type transcriptional regulator TnrA. | 0.808 |
| glnA_2 | glnA_1 | BkAM31D_24835 | BkAM31D_14265 | Glutamine synthetase. | Glutamine synthetase. | 0.904 |
| glnA_2 | tnrA | BkAM31D_24835 | BkAM31D_06035 | Glutamine synthetase. | HTH-type transcriptional regulator TnrA. | 0.760 |
| glnK | tnrA | BkAM31D_09270 | BkAM31D_06035 | Sensor histidine kinase GlnK. | HTH-type transcriptional regulator TnrA. | 0.626 |
| rpoB | dnaJ | BkAM31D_00680 | BkAM31D_05275 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.462 |
| rpoB | sigA | BkAM31D_00680 | BkAM31D_05445 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.937 |
| rpoB | tnrA | BkAM31D_00680 | BkAM31D_06035 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | HTH-type transcriptional regulator TnrA. | 0.540 |
| sigA | dnaJ | BkAM31D_05445 | BkAM31D_05275 | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.685 |
| sigA | rpoB | BkAM31D_05445 | BkAM31D_00680 | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.937 |
| sigA | tnrA | BkAM31D_05445 | BkAM31D_06035 | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | HTH-type transcriptional regulator TnrA. | 0.542 |
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