STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_1Oligopeptide transport system permease protein AppB; Frameshift. (535 aa)    
Predicted Functional Partners:
dppC_1
Dipeptide transport system permease protein DppC.
 
 
 0.879
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily.
 
  
 0.849
oppF_5
Oligopeptide transport ATP-binding protein OppF.
 
  
 0.847
gsiC_6
Glutathione transport system permease protein GsiC.
 
 0.635
gsiC_4
Glutathione-binding protein GsiB precursor; Frameshift.
 
 0.625
gsiC_5
Glutathione transport system permease protein GsiC.
 
 0.619
nikC_2
Nickel transport system permease protein NikC.
 
 
 0.614
nikB
Nickel-binding periplasmic protein precursor; Frameshift.
 
 0.610
gsiC_3
Glutathione transport system permease protein GsiC.
 
 0.603
gsiC_7
Glutathione transport system permease protein GsiD; Frameshift.
 
 0.599
Your Current Organism:
Bacillus krulwichiae
NCBI taxonomy Id: 199441
Other names: B. krulwichiae, Bacillus krulwichiae Yumoto et al. 2003, Bacillus krulwichii, IAM 15000, JCM 11691, NBRC 102362, NCIMB 13904, strain AM31D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.