Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARK30201.1 | fadD_1 | BkAM31D_10385 | BkAM31D_18440 | Lipase (class 3). | Long-chain-fatty-acid--CoA ligase. | 0.800 |
ARK30201.1 | fadD_2 | BkAM31D_10385 | BkAM31D_18450 | Lipase (class 3). | Long-chain-fatty-acid--CoA ligase. | 0.800 |
acdA_3 | fadD_1 | BkAM31D_24650 | BkAM31D_18440 | Acyl-CoA dehydrogenase. | Long-chain-fatty-acid--CoA ligase. | 0.600 |
acdA_3 | fadD_2 | BkAM31D_24650 | BkAM31D_18450 | Acyl-CoA dehydrogenase. | Long-chain-fatty-acid--CoA ligase. | 0.600 |
acdA_3 | fadE | BkAM31D_24650 | BkAM31D_20230 | Acyl-CoA dehydrogenase. | Putative acyl-CoA dehydrogenase. | 0.456 |
acdA_3 | fadN | BkAM31D_24650 | BkAM31D_20240 | Acyl-CoA dehydrogenase. | Putative 3-hydroxyacyl-CoA dehydrogenase. | 0.825 |
acpA | fadD_1 | BkAM31D_14935 | BkAM31D_18440 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Long-chain-fatty-acid--CoA ligase. | 0.670 |
acpA | fadD_2 | BkAM31D_14935 | BkAM31D_18450 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Long-chain-fatty-acid--CoA ligase. | 0.670 |
acpA | rplC | BkAM31D_14935 | BkAM31D_00725 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.805 |
acpA | rplM | BkAM31D_14935 | BkAM31D_00900 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.876 |
acpA | rplO | BkAM31D_14935 | BkAM31D_00820 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.772 |
fadD_1 | ARK30201.1 | BkAM31D_18440 | BkAM31D_10385 | Long-chain-fatty-acid--CoA ligase. | Lipase (class 3). | 0.800 |
fadD_1 | acdA_3 | BkAM31D_18440 | BkAM31D_24650 | Long-chain-fatty-acid--CoA ligase. | Acyl-CoA dehydrogenase. | 0.600 |
fadD_1 | acpA | BkAM31D_18440 | BkAM31D_14935 | Long-chain-fatty-acid--CoA ligase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.670 |
fadD_1 | fadD_2 | BkAM31D_18440 | BkAM31D_18450 | Long-chain-fatty-acid--CoA ligase. | Long-chain-fatty-acid--CoA ligase. | 0.901 |
fadD_1 | fadE | BkAM31D_18440 | BkAM31D_20230 | Long-chain-fatty-acid--CoA ligase. | Putative acyl-CoA dehydrogenase. | 0.664 |
fadD_1 | fadN | BkAM31D_18440 | BkAM31D_20240 | Long-chain-fatty-acid--CoA ligase. | Putative 3-hydroxyacyl-CoA dehydrogenase. | 0.677 |
fadD_1 | rplC | BkAM31D_18440 | BkAM31D_00725 | Long-chain-fatty-acid--CoA ligase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.607 |
fadD_1 | rplF | BkAM31D_18440 | BkAM31D_00800 | Long-chain-fatty-acid--CoA ligase. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.635 |
fadD_1 | rplM | BkAM31D_18440 | BkAM31D_00900 | Long-chain-fatty-acid--CoA ligase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.609 |
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