Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARK29962.1 | ARK32490.1 | BkAM31D_08845 | BkAM31D_22945 | Alcohol dehydrogenase. | D-arabitol-phosphate dehydrogenase. | 0.420 |
ARK32490.1 | ARK29962.1 | BkAM31D_22945 | BkAM31D_08845 | D-arabitol-phosphate dehydrogenase. | Alcohol dehydrogenase. | 0.420 |
ARK32490.1 | adh | BkAM31D_22945 | BkAM31D_02575 | D-arabitol-phosphate dehydrogenase. | Alcohol dehydrogenase. | 0.432 |
ARK32490.1 | bioF | BkAM31D_22945 | BkAM31D_02750 | D-arabitol-phosphate dehydrogenase. | 8-amino-7-oxononanoate synthase 2; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.498 |
ARK32490.1 | csbX | BkAM31D_22945 | BkAM31D_22940 | D-arabitol-phosphate dehydrogenase. | Alpha-ketoglutarate permease. | 0.698 |
ARK32490.1 | dhaK_2 | BkAM31D_22945 | BkAM31D_22930 | D-arabitol-phosphate dehydrogenase. | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | 0.551 |
ARK32490.1 | dhaL_2 | BkAM31D_22945 | BkAM31D_22925 | D-arabitol-phosphate dehydrogenase. | PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL. | 0.538 |
ARK32490.1 | ispD | BkAM31D_22945 | BkAM31D_00590 | D-arabitol-phosphate dehydrogenase. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). | 0.417 |
ARK32490.1 | tkt_3 | BkAM31D_22945 | BkAM31D_22915 | D-arabitol-phosphate dehydrogenase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.404 |
ARK32490.1 | ywlF_1 | BkAM31D_22945 | BkAM31D_22935 | D-arabitol-phosphate dehydrogenase. | Putative sugar phosphate isomerase YwlF. | 0.473 |
adh | ARK32490.1 | BkAM31D_02575 | BkAM31D_22945 | Alcohol dehydrogenase. | D-arabitol-phosphate dehydrogenase. | 0.432 |
bioF | ARK32490.1 | BkAM31D_02750 | BkAM31D_22945 | 8-amino-7-oxononanoate synthase 2; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | D-arabitol-phosphate dehydrogenase. | 0.498 |
csbX | ARK32490.1 | BkAM31D_22940 | BkAM31D_22945 | Alpha-ketoglutarate permease. | D-arabitol-phosphate dehydrogenase. | 0.698 |
csbX | dhaK_2 | BkAM31D_22940 | BkAM31D_22930 | Alpha-ketoglutarate permease. | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | 0.469 |
csbX | dhaL_2 | BkAM31D_22940 | BkAM31D_22925 | Alpha-ketoglutarate permease. | PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL. | 0.520 |
csbX | ywlF_1 | BkAM31D_22940 | BkAM31D_22935 | Alpha-ketoglutarate permease. | Putative sugar phosphate isomerase YwlF. | 0.490 |
dhaK_2 | ARK32490.1 | BkAM31D_22930 | BkAM31D_22945 | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | D-arabitol-phosphate dehydrogenase. | 0.551 |
dhaK_2 | csbX | BkAM31D_22930 | BkAM31D_22940 | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | Alpha-ketoglutarate permease. | 0.469 |
dhaK_2 | dhaL_2 | BkAM31D_22930 | BkAM31D_22925 | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL. | 0.999 |
dhaK_2 | tkt_3 | BkAM31D_22930 | BkAM31D_22915 | PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.483 |
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