SDY05234.1 protein (Nitrosomonas sp. Nm58) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDY05234.1

Sigma-54 interaction domain-containing protein. (484 aa)

Predicted Functional Partners:

SDY82587.1

0.971

SDY58738.1

0.965

SDY35881.1

0.881

SDZ08479.1

0.835

SDY02273.1

0.830

SDY26238.1

0.812

SDY08472.1

0.737

SDY60015.1

0.627

SDY18531.1

0.601

SDY49614.1

0.598

Your Current Organism:

Nitrosomonas sp. Nm58

NCBI taxonomy Id: 200126
Other names: N. sp. Nm58

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY02273.1	SDY05234.1	SAMN05421754_100184	SAMN05421754_1001192	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sigma-54 interaction domain-containing protein.	0.830
SDY02273.1	SDY08472.1	SAMN05421754_100184	SAMN05421754_1001304	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.712
SDY02273.1	SDY18531.1	SAMN05421754_100184	SAMN05421754_100333	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	0.849
SDY02273.1	SDY35881.1	SAMN05421754_100184	SAMN05421754_100779	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.703
SDY02273.1	SDY49614.1	SAMN05421754_100184	SAMN05421754_101129	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Two-component system, NtrC family, response regulator GlrR.	0.978
SDY02273.1	SDY58738.1	SAMN05421754_100184	SAMN05421754_101410	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein.	0.770
SDY02273.1	SDY82587.1	SAMN05421754_100184	SAMN05421754_102421	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein.	0.598
SDY02273.1	SDZ08479.1	SAMN05421754_100184	SAMN05421754_105515	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.684
SDY05234.1	SDY02273.1	SAMN05421754_1001192	SAMN05421754_100184	Sigma-54 interaction domain-containing protein.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.830
SDY05234.1	SDY08472.1	SAMN05421754_1001192	SAMN05421754_1001304	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.737
SDY05234.1	SDY18531.1	SAMN05421754_1001192	SAMN05421754_100333	Sigma-54 interaction domain-containing protein.	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	0.601
SDY05234.1	SDY26238.1	SAMN05421754_1001192	SAMN05421754_100510	Sigma-54 interaction domain-containing protein.	Adenylate cyclase.	0.812
SDY05234.1	SDY35881.1	SAMN05421754_1001192	SAMN05421754_100779	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.881
SDY05234.1	SDY49614.1	SAMN05421754_1001192	SAMN05421754_101129	Sigma-54 interaction domain-containing protein.	Two-component system, NtrC family, response regulator GlrR.	0.598
SDY05234.1	SDY58738.1	SAMN05421754_1001192	SAMN05421754_101410	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein.	0.965
SDY05234.1	SDY60015.1	SAMN05421754_1001192	SAMN05421754_101456	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein.	0.627
SDY05234.1	SDY82587.1	SAMN05421754_1001192	SAMN05421754_102421	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein.	0.971
SDY05234.1	SDZ08479.1	SAMN05421754_1001192	SAMN05421754_105515	Sigma-54 interaction domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.835
SDY08472.1	SDY02273.1	SAMN05421754_1001304	SAMN05421754_100184	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.712
SDY08472.1	SDY05234.1	SAMN05421754_1001304	SAMN05421754_1001192	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Sigma-54 interaction domain-containing protein.	0.737