STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY12083.1Uncharacterized membrane protein. (460 aa)    
Predicted Functional Partners:
SDY12033.1
Hypothetical protein.
 
   
 0.956
SDY12059.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.949
SDY12007.1
PelD GGDEF domain-containing protein.
 
   
 0.942
SDY12110.1
Extracellular protein.
 
   
 0.911
SDY87242.1
Hypothetical protein.
 
   
 0.817
SDY87273.1
Tetratricopeptide repeat-containing protein.
 
   
 0.789
SDY87415.1
Hypothetical protein.
  
     0.595
SDY87361.1
Hypothetical protein.
  
     0.594
SDY87329.1
Hypothetical protein.
 
   
 0.527
SDY01371.1
Glycoside-hydrolase family GH114.
 
   
 0.518
Your Current Organism:
Nitrosomonas sp. Nm58
NCBI taxonomy Id: 200126
Other names: N. sp. Nm58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.