STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY27181.1Putative rRNA methylase. (192 aa)    
Predicted Functional Partners:
SDY27152.1
Glycine/D-amino acid oxidase.
 
  0.981
SDY27122.1
HopJ type III effector protein.
       0.786
SDY53998.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
  0.652
SDY22771.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
    
 0.634
SDY46840.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
    
 0.566
SDY22687.1
Amino acid adenylation domain-containing protein.
    
 0.548
SDY27070.1
Hypothetical protein.
       0.533
SDY22717.1
Acyl transferase domain-containing protein.
     
 0.499
SDY53283.1
Adenosylhomocysteine nucleosidase/5'-methylthioadenosine nucleosidase.
  
  0.485
SDY27213.1
Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.467
Your Current Organism:
Nitrosomonas sp. Nm58
NCBI taxonomy Id: 200126
Other names: N. sp. Nm58
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