STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY31659.1acyl-CoA ligase (AMP-forming), exosortase A-associated. (527 aa)    
Predicted Functional Partners:
SDY22717.1
Acyl transferase domain-containing protein.
 
 0.994
SDY80504.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.964
SDY31607.1
Diaminopimelate decarboxylase.
 
    0.962
SDY46840.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
0.949
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.947
SDY73200.1
Acyl carrier protein.
 
  0.946
SDY22771.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
0.920
rplC
Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.894
rplM
Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.893
rplO
Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.893
Your Current Organism:
Nitrosomonas sp. Nm58
NCBI taxonomy Id: 200126
Other names: N. sp. Nm58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.