STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY74908.1Amino acid transporter. (476 aa)    
Predicted Functional Partners:
SDY03360.1
Alpha amylase, catalytic domain.
   
 0.970
SDY01902.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
   
 0.970
SDY74851.1
Hypothetical protein.
       0.845
SDY74879.1
Hypothetical protein.
       0.845
SDY74797.1
Allophanate hydrolase.
   
 0.784
SDY74824.1
Urea carboxylase.
  
  
 0.753
SDZ01895.1
Outer membrane protein (porin).
  
    0.711
SDY43173.1
O-antigen ligase.
  
     0.707
SDY83093.1
Hypothetical protein.
  
     0.699
SDZ13233.1
Putative copper resistance protein D.
 
     0.676
Your Current Organism:
Nitrosomonas sp. Nm58
NCBI taxonomy Id: 200126
Other names: N. sp. Nm58
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