STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY77365.123S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family. (179 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.737
SDY26692.1
23S rRNA (guanine2445-N2)-methyltransferase / 23S rRNA (guanine2069-N7)-methyltransferase; Belongs to the methyltransferase superfamily.
  
 
 0.736
SDY77396.1
Phosphohistidine phosphatase.
       0.691
SDY53518.1
Exodeoxyribonuclease-3.
   
    0.677
SDY74990.1
Exodeoxyribonuclease-3.
   
    0.677
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.623
rimO
Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
 
    0.618
SDY27371.1
23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
   
 0.596
SDZ10322.1
23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
   
 0.521
SDY77331.1
stearoyl-CoA desaturase (delta-9 desaturase).
       0.501
Your Current Organism:
Nitrosomonas sp. Nm58
NCBI taxonomy Id: 200126
Other names: N. sp. Nm58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.