PCANC_15594 protein (Puccinia coronata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PCANC_15594

Glutamine amidotransferase type-2 domain-containing protein. (614 aa)

Predicted Functional Partners:

PCANC_08876

0.953

PCANC_10993

0.950

PCANC_07840

0.943

PCANC_01888

0.938

PCANC_00150

0.938

PCANC_00389

0.930

PCANC_22850

0.925

PCANC_10031

0.925

PCANC_05664

0.876

PCANC_18127

0.851

Your Current Organism:

Puccinia coronata

NCBI taxonomy Id: 200324
Other names: P. coronata var. avenae f. sp. avenae, Puccinia coronata var. avenae f. sp. avenae

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PCANC_00150	PCANC_00389	A0A2N5W8I3	A0A2N5VQ02	Uncharacterized protein.	Homoserine dehydrogenase.	0.989
PCANC_00150	PCANC_05664	A0A2N5W8I3	A0A2N5VXW9	Uncharacterized protein.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.435
PCANC_00150	PCANC_07840	A0A2N5W8I3	A0A2N5TPZ0	Uncharacterized protein.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.909
PCANC_00150	PCANC_08876	A0A2N5W8I3	A0A2N5VS35	Uncharacterized protein.	Aspartate aminotransferase.	0.946
PCANC_00150	PCANC_10031	A0A2N5W8I3	A0A2N5UZD9	Uncharacterized protein.	Uncharacterized protein.	0.910
PCANC_00150	PCANC_10993	A0A2N5W8I3	A0A2N5UGK2	Uncharacterized protein.	Aspartate aminotransferase.	0.946
PCANC_00150	PCANC_15594	A0A2N5W8I3	A0A2N5SJS8	Uncharacterized protein.	Glutamine amidotransferase type-2 domain-containing protein.	0.938
PCANC_00150	PCANC_18127	A0A2N5W8I3	A0A2N5SH46	Uncharacterized protein.	Uncharacterized protein.	0.843
PCANC_00150	PCANC_22850	A0A2N5W8I3	A0A2N5URG3	Uncharacterized protein.	Uncharacterized protein.	0.910
PCANC_00389	PCANC_00150	A0A2N5VQ02	A0A2N5W8I3	Homoserine dehydrogenase.	Uncharacterized protein.	0.989
PCANC_00389	PCANC_01888	A0A2N5VQ02	A0A2N5W4I7	Homoserine dehydrogenase.	ACT domain-containing protein.	0.998
PCANC_00389	PCANC_05664	A0A2N5VQ02	A0A2N5VXW9	Homoserine dehydrogenase.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.676
PCANC_00389	PCANC_07840	A0A2N5VQ02	A0A2N5TPZ0	Homoserine dehydrogenase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.928
PCANC_00389	PCANC_08876	A0A2N5VQ02	A0A2N5VS35	Homoserine dehydrogenase.	Aspartate aminotransferase.	0.940
PCANC_00389	PCANC_10031	A0A2N5VQ02	A0A2N5UZD9	Homoserine dehydrogenase.	Uncharacterized protein.	0.896
PCANC_00389	PCANC_10993	A0A2N5VQ02	A0A2N5UGK2	Homoserine dehydrogenase.	Aspartate aminotransferase.	0.883
PCANC_00389	PCANC_15594	A0A2N5VQ02	A0A2N5SJS8	Homoserine dehydrogenase.	Glutamine amidotransferase type-2 domain-containing protein.	0.930
PCANC_00389	PCANC_18127	A0A2N5VQ02	A0A2N5SH46	Homoserine dehydrogenase.	Uncharacterized protein.	0.652
PCANC_00389	PCANC_22850	A0A2N5VQ02	A0A2N5URG3	Homoserine dehydrogenase.	Uncharacterized protein.	0.896
PCANC_01888	PCANC_00389	A0A2N5W4I7	A0A2N5VQ02	ACT domain-containing protein.	Homoserine dehydrogenase.	0.998