STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCANC_16250Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
PCANC_17740
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.822
PCANC_07350
2Fe-2S ferredoxin-type domain-containing protein.
  
 0.788
PCANC_03105
2Fe-2S ferredoxin-type domain-containing protein.
  
 0.788
PCANC_21131
Uncharacterized protein.
    
 0.711
PCANC_07849
Carrier domain-containing protein.
    
 0.711
PCANC_08129
Carrier domain-containing protein.
    
 0.711
MED10
Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.687
PCANC_17656
AB hydrolase-1 domain-containing protein.
   
 0.672
PCANC_22171
AB hydrolase-1 domain-containing protein.
   
 0.672
PCANC_17725
Uncharacterized protein.
   
 0.672
Your Current Organism:
Puccinia coronata
NCBI taxonomy Id: 200324
Other names: P. coronata var. avenae f. sp. avenae, Puccinia coronata var. avenae f. sp. avenae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.