STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCANC_04642Uncharacterized protein. (462 aa)    
Predicted Functional Partners:
PCANC_02086
Uncharacterized protein.
   
 0.985
PCANC_11056
Small nuclear ribonucleoprotein G.
   
 0.981
PCANC_13324
Nsp1_C domain-containing protein.
    
 0.974
PCANC_05317
Nsp1_C domain-containing protein.
    
 0.974
PCANC_01355
Small nuclear ribonucleoprotein Sm D2.
   
 0.970
PCANC_10378
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.959
PCANC_01455
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.959
PCANC_08288
RRM domain-containing protein.
   
 0.953
PCANC_06467
RRM domain-containing protein.
   
 0.953
PCANC_23321
Small nuclear ribonucleoprotein Sm D3.
   
 0.950
Your Current Organism:
Puccinia coronata
NCBI taxonomy Id: 200324
Other names: P. coronata var. avenae f. sp. avenae, Puccinia coronata var. avenae f. sp. avenae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.