A0A453HFM7 protein (Aegilops tauschii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A453HFM7

Protein kinase domain-containing protein. (859 aa)

Predicted Functional Partners:

A0A453JD90

0.913

A0A453BL75

0.902

A0A453B432

0.894

A0A452Y114

0.881

A0A452YKR6

0.881

A0A453N3P1

0.881

A0A453N6W0

0.881

A0A453RYS3

0.881

A0A453NIJ6

0.877

A0A453T314

0.877

Your Current Organism:

Aegilops tauschii

NCBI taxonomy Id: 200361
Other names: A. tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata (Eig) Tzvelev

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A452Y114	A0A453B432	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.986
A0A452Y114	A0A453BL75	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.985
A0A452Y114	A0A453HFM7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.881
A0A452Y114	A0A453JD90	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.993
A0A452Y114	A0A453N3P1	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
A0A452Y114	A0A453NIJ6	Uncharacterized protein.	Sm domain-containing protein.	0.978
A0A452Y114	A0A453RYS3	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
A0A452Y114	A0A453T314	Uncharacterized protein.	Sm domain-containing protein.	0.978
A0A452YKR6	A0A453B432	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.986
A0A452YKR6	A0A453BL75	RRM domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.985
A0A452YKR6	A0A453HFM7	RRM domain-containing protein.	Protein kinase domain-containing protein.	0.881
A0A452YKR6	A0A453JD90	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.993
A0A452YKR6	A0A453N3P1	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
A0A452YKR6	A0A453NIJ6	RRM domain-containing protein.	Sm domain-containing protein.	0.978
A0A452YKR6	A0A453RYS3	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
A0A452YKR6	A0A453T314	RRM domain-containing protein.	Sm domain-containing protein.	0.978
A0A453B432	A0A452Y114	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.986
A0A453B432	A0A452YKR6	Small nuclear ribonucleoprotein G.	RRM domain-containing protein.	0.986
A0A453B432	A0A453BL75	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein-associated protein.	0.999
A0A453B432	A0A453HFM7	Small nuclear ribonucleoprotein G.	Protein kinase domain-containing protein.	0.894