STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A453RVT2RING-type E3 ubiquitin transferase. (671 aa)    
Predicted Functional Partners:
A0A453IBK5
Uncharacterized protein.
    
 
 0.800
A0A453L9I5
DUF667 domain-containing protein.
    
   0.750
A0A452XEL4
TPR_REGION domain-containing protein.
    
 
 0.744
A0A452XGW0
Uncharacterized protein.
    
 
 0.744
A0A452XJX8
Uncharacterized protein.
    
 
 0.744
A0A452XPF4
Uncharacterized protein.
    
 
 0.744
A0A452XPF9
ANK_REP_REGION domain-containing protein.
    
 
 0.744
A0A452XPS0
Uncharacterized protein.
    
 
 0.744
A0A452XQS2
Uncharacterized protein.
    
 
 0.744
A0A452Z8E1
Uncharacterized protein.
    
 
 0.744
Your Current Organism:
Aegilops tauschii
NCBI taxonomy Id: 200361
Other names: A. tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata, Aegilops tauschii subsp. strangulata (Eig) Tzvelev
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