STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF44625.1DNA-binding transcriptional activator of the SARP family. (491 aa)    
Predicted Functional Partners:
SDF44604.1
dTDP-L-oleandrosyltransferase.
 
     0.920
SDH19720.1
Predicted ATPase.
 
    0.702
SDF44941.1
Right handed beta helix region.
  
     0.691
SDF44782.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.669
SDG85357.1
Helix-turn-helix domain-containing protein.
  
     0.653
SDG98501.1
Helix-turn-helix domain-containing protein.
  
     0.653
SDF44437.1
Regulatory protein, luxR family.
  
     0.618
SDH60137.1
Helix-turn-helix domain-containing protein.
  
     0.606
SDG11146.1
Hypothetical protein.
  
     0.592
SDG85886.1
Transcriptional attenuator, LytR family.
   
    0.576
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.