STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF31879.1DNA-binding transcriptional regulator GbsR, MarR family. (165 aa)    
Predicted Functional Partners:
SDF31944.1
ABC-2 type transport system permease protein.
 
     0.766
SDF31928.1
ABC-2 type transport system ATP-binding protein.
 
     0.656
SDF31767.1
Adenosylcobinamide amidohydrolase.
       0.415
SDF31787.1
Iron complex transport system ATP-binding protein.
       0.415
SDF31831.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.415
SDF31861.1
Iron complex transport system substrate-binding protein.
       0.415
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.