STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF45787.1Protein of unknown function. (233 aa)    
Predicted Functional Partners:
SDF45812.1
Hypothetical protein.
 
     0.935
SDF45744.1
Conserved hypothetical phage tail region protein.
 
 
   0.902
SDF45615.1
Conserved hypothetical phage tail region protein.
 
 
   0.866
SDF45600.1
Conserved hypothetical phage tail region protein.
 
 
   0.853
SDF45716.1
Hypothetical protein.
 
     0.808
SDF45409.1
MSP (Major sperm protein) domain-containing protein.
 
     0.783
SDF45550.1
Phage protein D.
 
     0.780
SDF45576.1
Hypothetical protein.
 
     0.780
SDF45491.1
Phage tail protein domain-containing protein.
 
     0.768
SDF97417.1
TIGR02677 family protein.
  
     0.768
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
Server load: low (20%) [HD]