STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF76532.1Hypothetical protein. (449 aa)    
Predicted Functional Partners:
SDF76555.1
Hypothetical protein.
       0.833
SDF76519.1
ABC-2 type transport system ATP-binding protein.
       0.787
SDF76482.1
Putative zinc-finger.
       0.642
SDF76439.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.554
SDF76468.1
Hypothetical protein.
       0.513
SDF76498.1
ABC-type multidrug transport system, ATPase component.
       0.513
SDF76431.1
PucR C-terminal helix-turn-helix domain-containing protein.
       0.464
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.