Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF40273.1 | SDG07868.1 | SAMN05216553_101460 | SAMN05216553_105232 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D, polymerase domain-containing protein. | 0.993 |
SDF40273.1 | SDG07887.1 | SAMN05216553_101460 | SAMN05216553_105233 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D. | 0.992 |
SDF40273.1 | SDG09957.1 | SAMN05216553_101460 | SAMN05216553_105326 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku. | 0.807 |
SDF40273.1 | SDG67810.1 | SAMN05216553_101460 | SAMN05216553_110202 | Bifunctional non-homologous end joining protein LigD. | Bifunctional non-homologous end joining protein LigD. | 0.995 |
SDF40273.1 | SDG86595.1 | SAMN05216553_101460 | SAMN05216553_112170 | Bifunctional non-homologous end joining protein LigD. | DNA ligase D. | 0.992 |
SDF40273.1 | ku | SAMN05216553_101460 | SAMN05216553_101168 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.826 |
SDF40273.1 | ku-2 | SAMN05216553_101460 | SAMN05216553_110200 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.826 |
SDG07868.1 | SDF40273.1 | SAMN05216553_105232 | SAMN05216553_101460 | DNA ligase D, polymerase domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.993 |
SDG07868.1 | SDG07887.1 | SAMN05216553_105232 | SAMN05216553_105233 | DNA ligase D, polymerase domain-containing protein. | DNA ligase D. | 0.846 |
SDG07868.1 | SDG08348.1 | SAMN05216553_105232 | SAMN05216553_105252 | DNA ligase D, polymerase domain-containing protein. | ATP-dependent DNA ligase. | 0.884 |
SDG07868.1 | SDG09957.1 | SAMN05216553_105232 | SAMN05216553_105326 | DNA ligase D, polymerase domain-containing protein. | DNA end-binding protein Ku. | 0.830 |
SDG07868.1 | SDG67785.1 | SAMN05216553_105232 | SAMN05216553_110201 | DNA ligase D, polymerase domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.992 |
SDG07868.1 | SDG67810.1 | SAMN05216553_105232 | SAMN05216553_110202 | DNA ligase D, polymerase domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.915 |
SDG07868.1 | SDG86437.1 | SAMN05216553_105232 | SAMN05216553_112162 | DNA ligase D, polymerase domain-containing protein. | ATP-dependent DNA ligase. | 0.844 |
SDG07868.1 | ku | SAMN05216553_105232 | SAMN05216553_101168 | DNA ligase D, polymerase domain-containing protein. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.846 |
SDG07868.1 | ku-2 | SAMN05216553_105232 | SAMN05216553_110200 | DNA ligase D, polymerase domain-containing protein. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.845 |
SDG07887.1 | SDF40273.1 | SAMN05216553_105233 | SAMN05216553_101460 | DNA ligase D. | Bifunctional non-homologous end joining protein LigD. | 0.992 |
SDG07887.1 | SDG07868.1 | SAMN05216553_105233 | SAMN05216553_105232 | DNA ligase D. | DNA ligase D, polymerase domain-containing protein. | 0.846 |
SDG07887.1 | SDG08348.1 | SAMN05216553_105233 | SAMN05216553_105252 | DNA ligase D. | ATP-dependent DNA ligase. | 0.905 |
SDG07887.1 | SDG09957.1 | SAMN05216553_105233 | SAMN05216553_105326 | DNA ligase D. | DNA end-binding protein Ku. | 0.833 |
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