STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG12065.1TIGR03083 family protein. (211 aa)    
Predicted Functional Partners:
SDF81937.1
Multiple sugar transport system substrate-binding protein.
  
     0.578
SDG12048.1
Ribosomal protein S18 acetylase RimI.
       0.543
SDH14368.1
SnoaL-like domain-containing protein.
  
     0.508
SDF81916.1
Multiple sugar transport system permease protein.
  
     0.446
SDG30642.1
Hypothetical protein.
  
     0.419
SDH17348.1
Predicted arabinose efflux permease, MFS family.
  
     0.412
SDF81880.1
Multiple sugar transport system permease protein.
  
     0.404
SDH36658.1
DNA-binding transcriptional activator of the SARP family.
  
     0.402
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.