STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG18788.1Helix-turn-helix domain-containing protein. (510 aa)    
Predicted Functional Partners:
SDG45653.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.635
SDG18770.1
Hypothetical protein.
  
     0.610
SDF64360.1
Helix-turn-helix domain-containing protein.
  
     0.565
SDF42515.1
Hypothetical protein.
  
  
  0.545
SDH35404.1
Helix-turn-helix domain-containing protein.
  
     0.530
SDG17878.1
L-amino acid N-acyltransferase YncA.
  
     0.519
SDG25508.1
Ketosteroid isomerase-related protein.
  
     0.502
SDG99516.1
Helix-turn-helix domain-containing protein.
  
     0.497
SDF79715.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.475
SDH58716.1
DNA binding domain-containing protein, excisionase family.
  
    0.470
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.