STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG32289.1MerR HTH family regulatory protein. (283 aa)    
Predicted Functional Partners:
SDG32296.1
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
       0.788
SDG56197.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
   
  0.772
SDG94459.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.759
SDG32337.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
     0.696
SDF83066.1
Hypothetical protein.
  
 
   0.695
SDG32351.1
Nitroreductase.
 
     0.691
SDG80436.1
Hypothetical protein.
  
     0.691
SDG26013.1
NYN domain-containing protein.
  
   
 0.640
SDG70288.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.640
SDG35519.1
Ribosomal protein S18 acetylase RimI.
  
     0.603
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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