STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG47031.1Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains. (562 aa)    
Predicted Functional Partners:
SDH57577.1
Nitrogen fixation protein NifU.
  
 0.957
SDG46970.1
Polar amino acid transport system substrate-binding protein.
 
     0.818
SDG46987.1
Polar amino acid transport system permease protein.
       0.787
SDG47016.1
Polar amino acid transport system ATP-binding protein.
       0.774
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.758
SDH57527.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.755
SDG74940.1
Adenylyltransferase and sulfurtransferase.
  
 
 0.738
SDH57455.1
Fe-S cluster assembly protein SufB.
  
 0.715
SDH57488.1
Fe-S cluster assembly protein SufD.
  
 0.715
SDF32013.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
 0.674
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.