STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG71121.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
SDG71139.1
Hypothetical protein.
 
     0.951
SDG71104.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
     0.949
SDG71091.1
Hypothetical protein.
 
     0.930
SDG71059.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
     0.873
SDG71069.1
Hypothetical protein.
       0.817
SDH50275.1
Hypothetical protein.
 
     0.817
SDH50320.1
Hypothetical protein.
 
     0.793
SDH50152.1
Hypothetical protein.
 
     0.763
SDG78219.1
Protein of unknown function.
  
     0.731
SDG96862.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.714
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.