STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG65167.1DNA-binding transcriptional activator of the SARP family. (935 aa)    
Predicted Functional Partners:
SDG31572.1
WD40 repeat.
   
 0.954
SDH04808.1
Hypothetical protein.
  
 0.840
SDH04830.1
Signal transduction histidine kinase.
  
 0.840
SDG45653.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
  
    0.825
SDH20036.1
DNA-binding transcriptional regulator, LacI/PurR family.
   
 0.787
SDG09660.1
Helix-turn-helix domain-containing protein.
 
 
 0.754
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.747
SDF73520.1
PAS domain S-box-containing protein.
  
 0.692
SDG71520.1
Anti-anti-sigma factor.
 
 
 0.688
SDF74718.1
Anti-anti-sigma factor.
 
 
 0.684
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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