Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF88160.1 | SDF89281.1 | SAMN05216553_1043 | SAMN05216553_10451 | Malate dehydrogenase. | Succinate dehydrogenase subunit A. | 0.897 |
SDF88160.1 | SDF93809.1 | SAMN05216553_1043 | SAMN05216553_104273 | Malate dehydrogenase. | 2-oxoglutarate decarboxylase. | 0.914 |
SDF88160.1 | SDH05839.1 | SAMN05216553_1043 | SAMN05216553_11582 | Malate dehydrogenase. | Citrate synthase; Belongs to the citrate synthase family. | 0.961 |
SDF88160.1 | SDH05851.1 | SAMN05216553_1043 | SAMN05216553_11583 | Malate dehydrogenase. | Citrate synthase; Belongs to the citrate synthase family. | 0.971 |
SDF88160.1 | SDH13731.1 | SAMN05216553_1043 | SAMN05216553_116172 | Malate dehydrogenase. | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.992 |
SDF88160.1 | fumC | SAMN05216553_1043 | SAMN05216553_111167 | Malate dehydrogenase. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.949 |
SDF88160.1 | sucC | SAMN05216553_1043 | SAMN05216553_102646 | Malate dehydrogenase. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.916 |
SDF88160.1 | sucD | SAMN05216553_1043 | SAMN05216553_102647 | Malate dehydrogenase. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.925 |
SDF89281.1 | SDF88160.1 | SAMN05216553_10451 | SAMN05216553_1043 | Succinate dehydrogenase subunit A. | Malate dehydrogenase. | 0.897 |
SDF89281.1 | SDF89325.1 | SAMN05216553_10451 | SAMN05216553_10453 | Succinate dehydrogenase subunit A. | Succinate dehydrogenase subunit C. | 0.999 |
SDF89281.1 | SDF93809.1 | SAMN05216553_10451 | SAMN05216553_104273 | Succinate dehydrogenase subunit A. | 2-oxoglutarate decarboxylase. | 0.992 |
SDF89281.1 | SDH05839.1 | SAMN05216553_10451 | SAMN05216553_11582 | Succinate dehydrogenase subunit A. | Citrate synthase; Belongs to the citrate synthase family. | 0.899 |
SDF89281.1 | SDH05851.1 | SAMN05216553_10451 | SAMN05216553_11583 | Succinate dehydrogenase subunit A. | Citrate synthase; Belongs to the citrate synthase family. | 0.934 |
SDF89281.1 | SDH13731.1 | SAMN05216553_10451 | SAMN05216553_116172 | Succinate dehydrogenase subunit A. | Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.979 |
SDF89281.1 | fumC | SAMN05216553_10451 | SAMN05216553_111167 | Succinate dehydrogenase subunit A. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.974 |
SDF89281.1 | mdh | SAMN05216553_10451 | SAMN05216553_102671 | Succinate dehydrogenase subunit A. | Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. | 0.897 |
SDF89281.1 | sucC | SAMN05216553_10451 | SAMN05216553_102646 | Succinate dehydrogenase subunit A. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.977 |
SDF89281.1 | sucD | SAMN05216553_10451 | SAMN05216553_102647 | Succinate dehydrogenase subunit A. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.973 |
SDF89325.1 | SDF89281.1 | SAMN05216553_10453 | SAMN05216553_10451 | Succinate dehydrogenase subunit C. | Succinate dehydrogenase subunit A. | 0.999 |
SDF89325.1 | SDF93809.1 | SAMN05216553_10453 | SAMN05216553_104273 | Succinate dehydrogenase subunit C. | 2-oxoglutarate decarboxylase. | 0.987 |
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