STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG80525.1Helix-turn-helix domain-containing protein. (69 aa)    
Predicted Functional Partners:
SDG80503.1
Site-specific recombinase XerD.
 
   
 0.978
SDG94459.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.862
SDF64242.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.798
SDG80538.1
Hypothetical protein.
       0.762
SDG56197.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
  
  0.757
SDF88444.1
Hypothetical protein.
 
   
 0.714
SDG80555.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
     
 0.523
SDG51259.1
Terpene synthase family, metal binding domain.
  
     0.502
SDF30592.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.497
SDH44871.1
Protein of unknown function.
  
     0.495
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.