STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH04491.1Alginate lyase. (389 aa)    
Predicted Functional Partners:
SDG08447.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
     0.747
SDH04469.1
Protein of unknown function.
 
     0.732
ilvD-2
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
       0.726
SDF60227.1
Chitinase.
     
 0.711
SDF95274.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
  
  0.710
SDF33789.1
Ricin-type beta-trefoil lectin domain-like.
  
  
  0.639
SDG51416.1
Endoglucanase.
 
  
 0.621
SDH04446.1
Predicted outer membrane protein.
 
     0.612
SDG47910.1
F5/8 type C domain-containing protein.
  
  
  0.603
SDH08792.1
Proprotein convertase P-domain-containing protein.
 
     0.593
Your Current Organism:
Lechevalieria fradiae
NCBI taxonomy Id: 200378
Other names: AS 4.3506, CGMCC 4.3506, DSM 45099, JCM 14205, L. fradiae, Lechevalieria fradiae Zhang et al. 2007, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.