Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DES48_101210 | rnr | GCA_900168775_02107 | GCA_900168775_00874 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.864 |
DES48_101210 | rph | GCA_900168775_02107 | GCA_900168775_02324 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.681 |
DES48_101257 | DES48_101503 | GCA_900168775_01853 | GCA_900168775_01608 | Unannotated protein. | Unannotated protein. | 0.774 |
DES48_101257 | DES48_103173 | GCA_900168775_01853 | GCA_900168775_00170 | Unannotated protein. | Unannotated protein. | 0.439 |
DES48_101257 | rnr | GCA_900168775_01853 | GCA_900168775_00874 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.737 |
DES48_101257 | rph | GCA_900168775_01853 | GCA_900168775_02324 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.844 |
DES48_101257 | rplD | GCA_900168775_01853 | GCA_900168775_03208 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.995 |
DES48_101257 | rpsO | GCA_900168775_01853 | GCA_900168775_01614 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.964 |
DES48_101257 | rsmA | GCA_900168775_01853 | GCA_900168775_02945 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.836 |
DES48_101503 | DES48_101257 | GCA_900168775_01608 | GCA_900168775_01853 | Unannotated protein. | Unannotated protein. | 0.774 |
DES48_101503 | rnr | GCA_900168775_01608 | GCA_900168775_00874 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.617 |
DES48_101503 | rph | GCA_900168775_01608 | GCA_900168775_02324 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.706 |
DES48_101503 | rplD | GCA_900168775_01608 | GCA_900168775_03208 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.982 |
DES48_101503 | rpsO | GCA_900168775_01608 | GCA_900168775_01614 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.976 |
DES48_101503 | rsmA | GCA_900168775_01608 | GCA_900168775_02945 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.759 |
DES48_103173 | DES48_101257 | GCA_900168775_00170 | GCA_900168775_01853 | Unannotated protein. | Unannotated protein. | 0.439 |
DES48_103173 | rnr | GCA_900168775_00170 | GCA_900168775_00874 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.601 |
DES48_103173 | rplD | GCA_900168775_00170 | GCA_900168775_03208 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.473 |
DES48_10652 | rnr | GCA_900168775_00873 | GCA_900168775_00874 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.825 |
rnr | DES48_101210 | GCA_900168775_00874 | GCA_900168775_02107 | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Unannotated protein. | 0.864 |
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