Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DES48_101509 | DES48_101561 | GCA_900168775_01602 | GCA_900168775_01550 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.568 |
DES48_101509 | DES48_103107 | GCA_900168775_01602 | GCA_900168775_03360 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.686 |
DES48_101509 | secD | GCA_900168775_01602 | GCA_900168775_02403 | Unannotated protein. | Unannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.562 |
DES48_101556 | DES48_101560 | GCA_900168775_01555 | GCA_900168775_01551 | Unannotated protein. | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.400 |
DES48_101556 | DES48_101561 | GCA_900168775_01555 | GCA_900168775_01550 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.542 |
DES48_101556 | rimM | GCA_900168775_01555 | GCA_900168775_01547 | Unannotated protein. | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.401 |
DES48_101556 | rnhB | GCA_900168775_01555 | GCA_900168775_01552 | Unannotated protein. | Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.506 |
DES48_101560 | DES48_101556 | GCA_900168775_01551 | GCA_900168775_01555 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein. | 0.400 |
DES48_101560 | DES48_101561 | GCA_900168775_01551 | GCA_900168775_01550 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; Belongs to the peptidase S26 family. | 0.808 |
DES48_101560 | DES48_103107 | GCA_900168775_01551 | GCA_900168775_03360 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; Belongs to the peptidase S26 family. | 0.459 |
DES48_101560 | rimM | GCA_900168775_01551 | GCA_900168775_01547 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.495 |
DES48_101560 | rnhB | GCA_900168775_01551 | GCA_900168775_01552 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.706 |
DES48_101560 | rplS | GCA_900168775_01551 | GCA_900168775_01549 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.869 |
DES48_101561 | DES48_101509 | GCA_900168775_01550 | GCA_900168775_01602 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein. | 0.568 |
DES48_101561 | DES48_101556 | GCA_900168775_01550 | GCA_900168775_01555 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein. | 0.542 |
DES48_101561 | DES48_101560 | GCA_900168775_01550 | GCA_900168775_01551 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.808 |
DES48_101561 | DES48_102535 | GCA_900168775_01550 | GCA_900168775_00794 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein. | 0.558 |
DES48_101561 | DES48_103107 | GCA_900168775_01550 | GCA_900168775_03360 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Belongs to the peptidase S26 family. | 0.677 |
DES48_101561 | lepA | GCA_900168775_01550 | GCA_900168775_02452 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.655 |
DES48_101561 | rimM | GCA_900168775_01550 | GCA_900168775_01547 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.545 |
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