STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cinAUnannotated protein; Belongs to the CinA family. (419 aa)    
Predicted Functional Partners:
DES48_101474
Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.995
nadD
Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
 
 0.909
DES48_10423
Unannotated protein; Belongs to the NAPRTase family.
  
 
 0.863
DES48_1162
Unannotated protein; Belongs to the NadC/ModD family.
    
 0.859
DES48_10124
Unannotated protein.
 
  
  0.853
DES48_1163
Unannotated protein; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.830
GCA_900168775_01978
Unannotated protein.
    
 0.821
rsfS
Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
 
  
 0.820
DES48_102200
Unannotated protein.
  
 
  0.808
DES48_108116
Unannotated protein.
 
  
  0.793
Your Current Organism:
Paraliobacillus ryukyuensis
NCBI taxonomy Id: 200904
Other names: DSM 15140, IAM 15001, JCM 21472, NBRC 100001, NRIC 0520, P. ryukyuensis, Paraliobacillus ryukyuensis Ishikawa et al. 2003, strain O15-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.