Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DES48_1011 | DES48_1012 | GCA_900168775_02386 | GCA_900168775_02387 | Unannotated protein. | Unannotated protein. | 0.783 |
DES48_1011 | DES48_1014 | GCA_900168775_02386 | GCA_900168775_02389 | Unannotated protein. | Unannotated protein. | 0.464 |
DES48_1011 | nadE | GCA_900168775_02386 | GCA_900168775_02388 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.740 |
DES48_1012 | DES48_1011 | GCA_900168775_02387 | GCA_900168775_02386 | Unannotated protein. | Unannotated protein. | 0.783 |
DES48_1012 | DES48_1014 | GCA_900168775_02387 | GCA_900168775_02389 | Unannotated protein. | Unannotated protein. | 0.483 |
DES48_1012 | nadE | GCA_900168775_02387 | GCA_900168775_02388 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.851 |
DES48_1014 | DES48_1011 | GCA_900168775_02389 | GCA_900168775_02386 | Unannotated protein. | Unannotated protein. | 0.464 |
DES48_1014 | DES48_1012 | GCA_900168775_02389 | GCA_900168775_02387 | Unannotated protein. | Unannotated protein. | 0.483 |
DES48_1014 | DES48_1015 | GCA_900168775_02389 | GCA_900168775_02390 | Unannotated protein. | Unannotated protein. | 0.500 |
DES48_1014 | DES48_101535 | GCA_900168775_02389 | GCA_900168775_01576 | Unannotated protein. | Unannotated protein. | 0.582 |
DES48_1014 | aspS | GCA_900168775_02389 | GCA_900168775_02413 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.735 |
DES48_1014 | metG | GCA_900168775_02389 | GCA_900168775_02941 | Unannotated protein. | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.552 |
DES48_1014 | nadE | GCA_900168775_02389 | GCA_900168775_02388 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.601 |
DES48_1014 | rplS | GCA_900168775_02389 | GCA_900168775_01549 | Unannotated protein. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.549 |
DES48_1014 | ruvA | GCA_900168775_02389 | GCA_900168775_02392 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.606 |
DES48_1014 | tyrS | GCA_900168775_02389 | GCA_900168775_02225 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.576 |
DES48_1015 | DES48_1014 | GCA_900168775_02390 | GCA_900168775_02389 | Unannotated protein. | Unannotated protein. | 0.500 |
DES48_101535 | DES48_1014 | GCA_900168775_01576 | GCA_900168775_02389 | Unannotated protein. | Unannotated protein. | 0.582 |
aspS | DES48_1014 | GCA_900168775_02413 | GCA_900168775_02389 | Unannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Unannotated protein. | 0.735 |
aspS | metG | GCA_900168775_02413 | GCA_900168775_02941 | Unannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.677 |
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