STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DES48_10963Unannotated protein. (367 aa)    
Predicted Functional Partners:
DES48_10964
Unannotated protein.
 
 
 0.993
DES48_10965
Unannotated protein.
 
 
 0.982
fni
Unannotated protein; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 0.966
DES48_101359
Unannotated protein.
 
 
 0.916
DES48_101358
Unannotated protein; Belongs to the HMG-CoA reductase family.
 
 0.871
DES48_10966
Unannotated protein.
 
     0.812
DES48_101360
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.604
DES48_10967
Unannotated protein.
       0.555
GCA_900168775_02924
Unannotated protein.
     
 0.494
DES48_10476
Unannotated protein; Belongs to the citrate synthase family.
     
 0.491
Your Current Organism:
Paraliobacillus ryukyuensis
NCBI taxonomy Id: 200904
Other names: DSM 15140, IAM 15001, JCM 21472, NBRC 100001, NRIC 0520, P. ryukyuensis, Paraliobacillus ryukyuensis Ishikawa et al. 2003, strain O15-7
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