STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900168775_03539Unannotated protein. (69 aa)    
Predicted Functional Partners:
cinA
Unannotated protein; Belongs to the CinA family.
    
 0.687
DES48_1219
Unannotated protein.
  
     0.680
DES48_11222
Unannotated protein.
  
     0.644
DES48_11910
Unannotated protein.
  
     0.611
GCA_900168775_01978
Unannotated protein.
  
     0.579
DES48_102122
Unannotated protein.
  
     0.528
GCA_900168775_03540
Unannotated protein.
      
0.523
GCA_900168775_03538
Unannotated protein.
       0.503
GCA_900168775_03537
Unannotated protein.
       0.402
Your Current Organism:
Paraliobacillus ryukyuensis
NCBI taxonomy Id: 200904
Other names: DSM 15140, IAM 15001, JCM 21472, NBRC 100001, NRIC 0520, P. ryukyuensis, Paraliobacillus ryukyuensis Ishikawa et al. 2003, strain O15-7
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