DMN91_002453 protein (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DMN91_002453

E3 UFM1-protein ligase 1-like protein. (765 aa)

Predicted Functional Partners:

X777_11015

0.954

DMN91_008255

0.952

X777_13266

0.844

DMN91_004225

0.790

X777_03691

0.765

DMN91_004969

0.727

DMN91_003702

0.547

X777_07293

0.543

DMN91_007596

0.495

DMN91_007219

0.467

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_002453	DMN91_003702	A0A026WAF0	A0A026X4G9	E3 UFM1-protein ligase 1-like protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.547
DMN91_002453	DMN91_004225	A0A026WAF0	A0A026X1T2	E3 UFM1-protein ligase 1-like protein.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.790
DMN91_002453	DMN91_004969	A0A026WAF0	A0A026WGZ4	E3 UFM1-protein ligase 1-like protein.	Putative Ufm1-specific protease.	0.727
DMN91_002453	DMN91_007219	A0A026WAF0	A0A026WQ29	E3 UFM1-protein ligase 1-like protein.	Ufm1-specific protease.	0.467
DMN91_002453	DMN91_007596	A0A026WAF0	A0A026X5H4	E3 UFM1-protein ligase 1-like protein.	Suppressor of G2 allele of SKP1-like protein.	0.495
DMN91_002453	DMN91_008255	A0A026WAF0	A0A026WT42	E3 UFM1-protein ligase 1-like protein.	DDRGK domain-containing protein.	0.952
DMN91_002453	X777_03691	A0A026WAF0	A0A026WK27	E3 UFM1-protein ligase 1-like protein.	Ubiquitin-fold modifier.	0.765
DMN91_002453	X777_07293	A0A026WAF0	A0A026WAQ0	E3 UFM1-protein ligase 1-like protein.	NEDD8-activating enzyme E1 catalytic subunit.	0.543
DMN91_002453	X777_11015	A0A026WAF0	A0A026W6L4	E3 UFM1-protein ligase 1-like protein.	CDK5RAP3-like protein.	0.954
DMN91_002453	X777_13266	A0A026WAF0	A0A026VYA9	E3 UFM1-protein ligase 1-like protein.	Ubiquitin-like modifier-activating enzyme.	0.844
DMN91_003702	DMN91_002453	A0A026X4G9	A0A026WAF0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E3 UFM1-protein ligase 1-like protein.	0.547
DMN91_003702	DMN91_004225	A0A026X4G9	A0A026X1T2	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.412
DMN91_003702	X777_03691	A0A026X4G9	A0A026WK27	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-fold modifier.	0.451
DMN91_003702	X777_07293	A0A026X4G9	A0A026WAQ0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	NEDD8-activating enzyme E1 catalytic subunit.	0.751
DMN91_003702	X777_13266	A0A026X4G9	A0A026VYA9	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-like modifier-activating enzyme.	0.753
DMN91_004225	DMN91_002453	A0A026X1T2	A0A026WAF0	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	E3 UFM1-protein ligase 1-like protein.	0.790
DMN91_004225	DMN91_003702	A0A026X1T2	A0A026X4G9	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.412
DMN91_004225	DMN91_004969	A0A026X1T2	A0A026WGZ4	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	Putative Ufm1-specific protease.	0.789
DMN91_004225	DMN91_007219	A0A026X1T2	A0A026WQ29	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	Ufm1-specific protease.	0.657
DMN91_004225	DMN91_008255	A0A026X1T2	A0A026WT42	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	DDRGK domain-containing protein.	0.742