DMN91_010165 protein (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DMN91_010165

Transcription factor TFIIIB component B''-like protein. (773 aa)

Predicted Functional Partners:

X777_13585

0.998

X777_00395

0.984

X777_04616

0.977

DMN91_006874

0.969

DMN91_000752

0.964

DMN91_010520

0.964

DMN91_006341

0.960

DMN91_004693

0.958

X777_08234

0.958

DMN91_009708

0.957

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_000752	DMN91_004693	A0A026W5U7	A0A026VTN7	TATA-box-binding protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.800
DMN91_000752	DMN91_006341	A0A026W5U7	A0A026WRU4	TATA-box-binding protein.	General transcription factor 3C polypeptide.	0.696
DMN91_000752	DMN91_006874	A0A026W5U7	A0A026WFL9	TATA-box-binding protein.	DNA-directed RNA polymerase III subunit RPC5.	0.690
DMN91_000752	DMN91_009708	A0A026W5U7	A0A026W3D0	TATA-box-binding protein.	DNA-directed RNA polymerase III subunit RPC9.	0.723
DMN91_000752	DMN91_010165	A0A026W5U7	A0A026WD65	TATA-box-binding protein.	Transcription factor TFIIIB component B''-like protein.	0.964
DMN91_000752	DMN91_010520	A0A026W5U7	A0A026WTY6	TATA-box-binding protein.	TATA-box-binding protein.	0.905
DMN91_000752	X777_00395	A0A026W5U7	A0A026WU45	TATA-box-binding protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.835
DMN91_000752	X777_04616	A0A026W5U7	A0A026X3Q1	TATA-box-binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.762
DMN91_000752	X777_08234	A0A026W5U7	A0A026WYA9	TATA-box-binding protein.	DNA-directed RNA polymerase III subunit RPC4.	0.814
DMN91_000752	X777_13585	A0A026W5U7	A0A026WXM8	TATA-box-binding protein.	Transcription factor IIIB 90 kDa subunit.	0.967
DMN91_004693	DMN91_000752	A0A026VTN7	A0A026W5U7	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-box-binding protein.	0.800
DMN91_004693	DMN91_006341	A0A026VTN7	A0A026WRU4	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor 3C polypeptide.	0.813
DMN91_004693	DMN91_006874	A0A026VTN7	A0A026WFL9	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC5.	0.999
DMN91_004693	DMN91_009708	A0A026VTN7	A0A026W3D0	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC9.	0.998
DMN91_004693	DMN91_010165	A0A026VTN7	A0A026WD65	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor TFIIIB component B''-like protein.	0.958
DMN91_004693	DMN91_010520	A0A026VTN7	A0A026WTY6	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-box-binding protein.	0.800
DMN91_004693	X777_00395	A0A026VTN7	A0A026WU45	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
DMN91_004693	X777_04616	A0A026VTN7	A0A026X3Q1	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
DMN91_004693	X777_08234	A0A026VTN7	A0A026WYA9	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC4.	0.999
DMN91_004693	X777_13585	A0A026VTN7	A0A026WXM8	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIIB 90 kDa subunit.	0.960