DMN91_000379 protein (Ooceraea biroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DMN91_000379

ADP-ribosylation factor-binding protein GGA1. (673 aa)

Predicted Functional Partners:

X777_11872

0.999

X777_11318

0.993

X777_06426

0.938

X777_09070

0.923

DMN91_003496

0.666

DMN91_011691

0.568

X777_09839

0.568

X777_02821

0.568

X777_13483

0.534

DMN91_008821

0.499

Your Current Organism:

Ooceraea biroi

NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMN91_000379	DMN91_003496	A0A026WD91	A0A026W7Q2	ADP-ribosylation factor-binding protein GGA1.	Ras-related protein Rab-5C.	0.666
DMN91_000379	DMN91_008821	A0A026WD91	A0A026WRR6	ADP-ribosylation factor-binding protein GGA1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.499
DMN91_000379	DMN91_011691	A0A026WD91	A0A026VXU6	ADP-ribosylation factor-binding protein GGA1.	Lysosomal aspartic protease; Belongs to the peptidase A1 family.	0.568
DMN91_000379	X777_02821	A0A026WD91	A0A026X1L8	ADP-ribosylation factor-binding protein GGA1.	Uncharacterized protein.	0.568
DMN91_000379	X777_06426	A0A026WD91	A0A026WCE0	ADP-ribosylation factor-binding protein GGA1.	Rab GTPase-binding effector protein.	0.938
DMN91_000379	X777_09070	A0A026WD91	A0A026WAJ1	ADP-ribosylation factor-binding protein GGA1.	Cation-independent mannose-6-phosphate receptor.	0.923
DMN91_000379	X777_09839	A0A026WD91	A0A026W601	ADP-ribosylation factor-binding protein GGA1.	Exosome complex component RRP40.	0.568
DMN91_000379	X777_11318	A0A026WD91	A0A026W2B1	ADP-ribosylation factor-binding protein GGA1.	Rab5 GDP/GTP exchange factor.	0.993
DMN91_000379	X777_11872	A0A026WD91	A0A026W1B8	ADP-ribosylation factor-binding protein GGA1.	Sortilin-related receptor.	0.999
DMN91_000379	X777_13483	A0A026WD91	A0A026WZ23	ADP-ribosylation factor-binding protein GGA1.	AN1-type zinc finger protein.	0.534
DMN91_003496	DMN91_000379	A0A026W7Q2	A0A026WD91	Ras-related protein Rab-5C.	ADP-ribosylation factor-binding protein GGA1.	0.666
DMN91_003496	DMN91_008821	A0A026W7Q2	A0A026WRR6	Ras-related protein Rab-5C.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.747
DMN91_003496	X777_06426	A0A026W7Q2	A0A026WCE0	Ras-related protein Rab-5C.	Rab GTPase-binding effector protein.	0.970
DMN91_003496	X777_09070	A0A026W7Q2	A0A026WAJ1	Ras-related protein Rab-5C.	Cation-independent mannose-6-phosphate receptor.	0.481
DMN91_003496	X777_11318	A0A026W7Q2	A0A026W2B1	Ras-related protein Rab-5C.	Rab5 GDP/GTP exchange factor.	0.999
DMN91_003496	X777_11872	A0A026W7Q2	A0A026W1B8	Ras-related protein Rab-5C.	Sortilin-related receptor.	0.552
DMN91_003496	X777_13483	A0A026W7Q2	A0A026WZ23	Ras-related protein Rab-5C.	AN1-type zinc finger protein.	0.550
DMN91_008821	DMN91_000379	A0A026WRR6	A0A026WD91	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	ADP-ribosylation factor-binding protein GGA1.	0.499
DMN91_008821	DMN91_003496	A0A026WRR6	A0A026W7Q2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-5C.	0.747
DMN91_008821	X777_09070	A0A026WRR6	A0A026WAJ1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Cation-independent mannose-6-phosphate receptor.	0.646