STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMN91_006142E3 ubiquitin-protein ligase. (877 aa)    
Predicted Functional Partners:
DMN91_009557
Ubiquitin-40S ribosomal protein S27a.
   
  0.859
X777_05067
Tumor suppressor p53-binding protein.
    
 0.822
DMN91_006938
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.819
X777_04521
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
    
 
 0.809
DMN91_002614
Ubiquitin-60S ribosomal protein L40.
    
 0.748
DMN91_008647
Ubiquitin-conjugating enzyme E2 variant.
     
 0.729
X777_08168
E3 ubiquitin-protein ligase RNF8-A.
     
 0.727
X777_06749
Breast cancer type 1 susceptibility protein-like protein.
    
 0.718
DMN91_001357
Polyubiquitin-A.
    
  0.703
X777_01238
Polyubiquitin-A.
    
  0.703
Your Current Organism:
Ooceraea biroi
NCBI taxonomy Id: 2015173
Other names: Cerapachys biroi, O. biroi, clonal raider ant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.