STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE78174.1CHAT domain-containing protein. (905 aa)    
Predicted Functional Partners:
SHE78248.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.898
SHE78210.1
Hypothetical protein.
 
     0.878
SHG37313.1
Predicted membrane protein.
  
     0.694
SHE50969.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.679
SHE49168.1
Hypothetical protein.
  
     0.616
SHF00784.1
ATP-binding cassette, subfamily C.
  
     0.593
SHG64127.1
Protein of unknown function.
  
     0.578
SHE76168.1
Trehalose 6-phosphatase.
   
    0.530
SHF00694.1
Lanthionine synthetase C-like protein.
  
     0.529
SHF00754.1
ATP-binding cassette, subfamily B.
  
     0.503
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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