SHF02237.1 protein (Streptoalloteichus hindustanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHF02237.1

rsbT antagonist protein RsbS. (165 aa)

Predicted Functional Partners:

SHF02162.1

0.993

SHF02201.1

0.993

SHF02124.1

0.968

SHF02277.1

0.960

SHF29374.1

0.901

SHF29825.1

0.869

SHF01978.1

0.867

SHF02431.1

0.856

SHF29964.1

0.798

SHG82457.1

0.770

Your Current Organism:

Streptoalloteichus hindustanus

NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHF01978.1	SHF02124.1	SAMN05444320_102275	SAMN05444320_102279	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Serine phosphatase RsbU, regulator of sigma subunit.	0.691
SHF01978.1	SHF02237.1	SAMN05444320_102275	SAMN05444320_102282	Anti-sigma regulatory factor (Ser/Thr protein kinase).	rsbT antagonist protein RsbS.	0.867
SHF01978.1	SHF02277.1	SAMN05444320_102275	SAMN05444320_102283	Anti-sigma regulatory factor (Ser/Thr protein kinase).	rsbT co-antagonist protein RsbR.	0.869
SHF01978.1	SHF29374.1	SAMN05444320_102275	SAMN05444320_103108	Anti-sigma regulatory factor (Ser/Thr protein kinase).	PAS domain S-box-containing protein.	0.793
SHF01978.1	SHG82457.1	SAMN05444320_102275	SAMN05444320_114104	Anti-sigma regulatory factor (Ser/Thr protein kinase).	ANTAR domain-containing protein.	0.816
SHF02124.1	SHF01978.1	SAMN05444320_102279	SAMN05444320_102275	Serine phosphatase RsbU, regulator of sigma subunit.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.691
SHF02124.1	SHF02162.1	SAMN05444320_102279	SAMN05444320_102280	Serine phosphatase RsbU, regulator of sigma subunit.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.955
SHF02124.1	SHF02201.1	SAMN05444320_102279	SAMN05444320_102281	Serine phosphatase RsbU, regulator of sigma subunit.	Serine/threonine-protein kinase RsbT.	0.950
SHF02124.1	SHF02237.1	SAMN05444320_102279	SAMN05444320_102282	Serine phosphatase RsbU, regulator of sigma subunit.	rsbT antagonist protein RsbS.	0.968
SHF02124.1	SHF02277.1	SAMN05444320_102279	SAMN05444320_102283	Serine phosphatase RsbU, regulator of sigma subunit.	rsbT co-antagonist protein RsbR.	0.969
SHF02124.1	SHF02431.1	SAMN05444320_102279	SAMN05444320_102287	Serine phosphatase RsbU, regulator of sigma subunit.	Serine/threonine-protein kinase RsbW.	0.709
SHF02124.1	SHF29374.1	SAMN05444320_102279	SAMN05444320_103108	Serine phosphatase RsbU, regulator of sigma subunit.	PAS domain S-box-containing protein.	0.756
SHF02124.1	SHF29825.1	SAMN05444320_102279	SAMN05444320_103125	Serine phosphatase RsbU, regulator of sigma subunit.	STAS domain-containing protein.	0.771
SHF02124.1	SHF29964.1	SAMN05444320_102279	SAMN05444320_103130	Serine phosphatase RsbU, regulator of sigma subunit.	Serine/threonine-protein kinase RsbW.	0.699
SHF02162.1	SHF02124.1	SAMN05444320_102280	SAMN05444320_102279	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Serine phosphatase RsbU, regulator of sigma subunit.	0.955
SHF02162.1	SHF02201.1	SAMN05444320_102280	SAMN05444320_102281	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Serine/threonine-protein kinase RsbT.	0.864
SHF02162.1	SHF02237.1	SAMN05444320_102280	SAMN05444320_102282	Anti-sigma regulatory factor (Ser/Thr protein kinase).	rsbT antagonist protein RsbS.	0.993
SHF02162.1	SHF02277.1	SAMN05444320_102280	SAMN05444320_102283	Anti-sigma regulatory factor (Ser/Thr protein kinase).	rsbT co-antagonist protein RsbR.	0.993
SHF02162.1	SHF29374.1	SAMN05444320_102280	SAMN05444320_103108	Anti-sigma regulatory factor (Ser/Thr protein kinase).	PAS domain S-box-containing protein.	0.793
SHF02162.1	SHG82457.1	SAMN05444320_102280	SAMN05444320_114104	Anti-sigma regulatory factor (Ser/Thr protein kinase).	ANTAR domain-containing protein.	0.640

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About