STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF30532.1TIGR03083 family protein. (260 aa)    
Predicted Functional Partners:
SHE44974.1
Helix-turn-helix domain-containing protein.
   
   0.690
SHF68941.1
Helix-turn-helix domain-containing protein.
   
   0.690
SHG63807.1
Helix-turn-helix domain-containing protein.
   
   0.690
SHG89508.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
   0.690
SHF26530.1
Helix-turn-helix domain-containing protein.
  
   0.497
SHH01029.1
Helix-turn-helix domain-containing protein.
  
   0.480
SHG02612.1
Helix-turn-helix domain-containing protein.
  
   0.469
SHE75659.1
Helix-turn-helix domain-containing protein.
  
   0.467
SHF40101.1
Helix-turn-helix domain-containing protein.
  
   0.459
SHG32114.1
Helix-turn-helix domain-containing protein.
  
   0.452
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.