STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF26764.1DNA-binding transcriptional regulator, FrmR family. (93 aa)    
Predicted Functional Partners:
SHF26731.1
Copper chaperone CopZ.
 
  
 0.847
SHF26676.1
Cu+-exporting ATPase.
 
  
 0.794
SHG99820.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
  
 0.756
SHF26704.1
Hypothetical protein.
     
 0.743
SHF02467.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
    
   0.502
SHF29991.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
    
   0.502
SHG08930.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.502
SHE56973.1
S-formylglutathione hydrolase FrmB.
  
  
 0.487
SHF16630.1
S-formylglutathione hydrolase FrmB.
  
  
 0.487
SHF44603.1
S-formylglutathione hydrolase FrmB.
  
  
 0.487
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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