STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF28430.1Transcriptional attenuator, LytR family. (324 aa)    
Predicted Functional Partners:
SHG67457.1
NAD-dependent deacetylase.
   
    0.844
SHG22867.1
DNA-binding transcriptional regulator, PucR family.
   
    0.820
SHG03623.1
DNA-binding transcriptional regulator, MarR family.
   
    0.811
SHH09491.1
Regulatory protein, luxR family.
   
    0.811
SHF00252.1
Transcriptional regulator.
  
    0.805
SHF14178.1
Transcriptional regulator, AsnC family.
   
    0.739
SHG09203.1
Transcriptional attenuator, LytR family.
 
   
0.612
SHE52273.1
Transcriptional attenuator, LytR family.
 
   
0.605
SHF66597.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
   
    0.587
SHE62763.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.582
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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