Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHF36927.1 | SHF43629.1 | SAMN05444320_103377 | SAMN05444320_103636 | Protein of unknown function. | DNA polymerase III, delta subunit. | 0.763 |
| SHF36927.1 | SHG10849.1 | SAMN05444320_103377 | SAMN05444320_106399 | Protein of unknown function. | Ribonuclease D. | 0.651 |
| SHF36927.1 | SHG68385.1 | SAMN05444320_103377 | SAMN05444320_11256 | Protein of unknown function. | MerR HTH family regulatory protein. | 0.774 |
| SHF36927.1 | glnE | SAMN05444320_103377 | SAMN05444320_103754 | Protein of unknown function. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.715 |
| SHF36927.1 | rbpA-2 | SAMN05444320_103377 | SAMN05444320_107159 | Protein of unknown function. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.775 |
| SHF36927.1 | rbpA-3 | SAMN05444320_103377 | SAMN05444320_10720 | Protein of unknown function. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.775 |
| SHF43629.1 | SHF36927.1 | SAMN05444320_103636 | SAMN05444320_103377 | DNA polymerase III, delta subunit. | Protein of unknown function. | 0.763 |
| SHF43629.1 | SHG10849.1 | SAMN05444320_103636 | SAMN05444320_106399 | DNA polymerase III, delta subunit. | Ribonuclease D. | 0.553 |
| SHF43629.1 | SHG68385.1 | SAMN05444320_103636 | SAMN05444320_11256 | DNA polymerase III, delta subunit. | MerR HTH family regulatory protein. | 0.769 |
| SHF43629.1 | glnE | SAMN05444320_103636 | SAMN05444320_103754 | DNA polymerase III, delta subunit. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.701 |
| SHF43629.1 | rbpA-2 | SAMN05444320_103636 | SAMN05444320_107159 | DNA polymerase III, delta subunit. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.771 |
| SHF43629.1 | rbpA-3 | SAMN05444320_103636 | SAMN05444320_10720 | DNA polymerase III, delta subunit. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.760 |
| SHF46293.1 | SHG08313.1 | SAMN05444320_103744 | SAMN05444320_106304 | Glutamine synthetase. | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | 0.843 |
| SHF46293.1 | SHG68385.1 | SAMN05444320_103744 | SAMN05444320_11256 | Glutamine synthetase. | MerR HTH family regulatory protein. | 0.466 |
| SHF46293.1 | SHG92729.1 | SAMN05444320_103744 | SAMN05444320_116100 | Glutamine synthetase. | Glutamine synthetase. | 0.874 |
| SHF46293.1 | glnD | SAMN05444320_103744 | SAMN05444320_106305 | Glutamine synthetase. | UTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.763 |
| SHF46293.1 | glnE | SAMN05444320_103744 | SAMN05444320_103754 | Glutamine synthetase. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.903 |
| SHG08313.1 | SHF46293.1 | SAMN05444320_106304 | SAMN05444320_103744 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Glutamine synthetase. | 0.843 |
| SHG08313.1 | SHG92729.1 | SAMN05444320_106304 | SAMN05444320_116100 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Glutamine synthetase. | 0.766 |
| SHG08313.1 | glnD | SAMN05444320_106304 | SAMN05444320_106305 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | UTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.999 |
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